for this_num_two in $num_str_two; do
if [ "$this_num_one" == "$this_num_two" ]; then
echo "duplicate AG $this_num_one found" \
- >> $RESULT_DIR/$seq.full
+ >> $seqres.full
return 1
fi
done
stream_index=1
while [ $stream_index -le $stream_count ]; do
this_stream_ags=`_get_stream_ags stream${stream_index}-dir`
- echo "stream $stream_index AGs: $this_stream_ags" >> $RESULT_DIR/$seq.full
+ echo "stream $stream_index AGs: $this_stream_ags" >> $seqres.full
_check_for_dupes "$ags_seen" "$this_stream_ags"
if [ $? -ne 0 ]; then
# this stream is not in seperate AGs to previous streams